PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018255P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 268aa    MW: 29595.5 Da    PI: 8.775
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018255P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.2e-32100153255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  MELO3C018255P1 100 PRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 153
                     9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.88E-1697154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2898154IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-23100153IPR006447Myb domain, plants
PfamPF002491.6E-7101152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNTPSSFPDL SLQISLPMST LPCEAKAIKP QSSTTVDSSS SGKSDLSHES GLFHLGFEAG  60
DLDGPLRRPH QACCNVRDHR DFKRSRGRVG CGVRRNIRAP RMRWTTTLHA HFVHAVELLG  120
GHERATPKSV LELMNVKDLT LAHVKSHLQM YRTVKNTVKE TADDCGRPEV EGDGMVLSSC  180
VKKSNFGSNH FQRIQRSSFV TSMHKSCDTT KSNADAFAKS RGIKVEGSSG DYHEAITMER  240
INLEFTLGRP SWQLDFGDPK ELALLNC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454673.10.0PREDICTED: probable transcription factor KAN4
SwissprotQ9FJV59e-52KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A0A0LFY81e-172A0A0A0LFY8_CUCSA; Uncharacterized protein
STRINGVIT_18s0001g11390.t011e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.16e-44G2-like family protein